Quick start
Three steps from a fresh install to a real Nomad job. You need abc on your $PATH (Overview) and a pre-configured ~/.abc/config.yaml handed out by your workspace lead.
1. Bootstrap the config directory
abc config init # creates ~/.abc/config.yaml with a placeholder context
Then replace the placeholder with the YAML your workspace lead gave you:
cp ~/Downloads/<your-name>.yaml ~/.abc/config.yaml
2. Activate the seedling context
abc auth context use seedling
# Confirm the active context and your identity:
abc auth context show
abc auth whoami
3. Preflight with abc doctor
Before submitting anything, confirm the CLI can actually reach and run
work on the cluster. abc doctor checks your config, connectivity, and
submits a tiny probe job end-to-end:
abc doctor
# Config + connectivity only (skip the probe job):
abc doctor --skip-job
Exit code 0 means you're good to go. If a check fails, the output tells
you which group (config / connectivity / workload) and why — fix that
first. See Reference → doctor for the full check list.
4. Verify your workspace
One workload is baked into the CLI — no script file required:
# Randomised stress-ng job: exercises CPU, VM, and I/O stressors
abc job run hello-cluster
# Add a debug sleep to exec into the running allocation before work begins
abc job run hello-cluster --sleep=120s
Check that the job was submitted and watch it appear:
abc job list --status running
abc job show <job-id>
See what you got
After a few runs, ask the CLI what your work cost:
# Year-to-date summary: spend + emissions
abc report
# One row per job/pipeline with cost + emissions (jobs first)
abc report runs
# Forensic view — run IDs, Nomad job IDs, exit codes, namespaces
abc report runs --full
abc report reads ~/.abc/db/local.db only — no network calls — and prints a
year-to-date personal summary: investigations explored, runs (succeeded vs.
retried), compute consumed, and the period's spend + emissions estimate.
abc report runs lists each run individually; job costs are exact, pipeline
costs are pending the per-task cache aggregator (the rows are marked). See
Reference → report for the full metric mapping,
the --show-rate-card provenance view, and the JSON schema.
Trouble?
| Symptom | Try |
|---|---|
| Anything not working | abc doctor — runs config + connectivity + a probe job and tells you which layer failed |
connect: connection refused | You need to be on the Stellenbosch network or Tailscale VPN |
403 Forbidden on submit | abc auth context show — confirm the seedling context is active and your token is set |
| Job goes to wrong namespace | abc auth context show — the nomad_namespace field in your config controls the default |
unknown command | abc --help, then abc <command> --help |
Next steps
- Tutorials → Hands-on walkthrough — exercises covering jobs and data (submit, monitor, debug, upload, encrypt, browse).
- Reference → job run — every
#ABCdirective and CLI flag. - Reference → pipeline run — Nextflow pipelines on the cluster.
- Reference → data —
data upload,data download, and object storage commands. - Reference → report — cost + emissions, per-run breakdowns.